Info • Lasiosphaeris hirsuta SMH4607-1 v1.0

Status

[August 2017] The Lasiosphaeris hirsuta SMH4607-1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lasiosphaeris hirsuta SMH4607-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.45
Sequencing read coverage depth 128.32x
# of contigs 14
# of scaffolds 14
# of scaffolds >= 2Kbp 14
Scaffold N50 4
Scaffold L50 (Mbp) 5.89
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.90, 6.67, 6.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40893 40368 98.7%
Ests est.fasta 107418796 107339614 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1639 1377
transcript 1483 1237
exon 548 335
intron 93 65
description:
protein length (aa) 437 351
exons per gene 2.71 2
# of gene models 14131


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.