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Info • Lasiosphaeria miniovina SMH2392-1A v1.0

Status

[July 2017] The Lasiosphaeria miniovina SMH2392-1A genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lasiosphaeria miniovina SMH2392-1A v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.42
Sequencing read coverage depth 100x
# of contigs 10
# of scaffolds 10
# of scaffolds >= 2Kbp 10
Scaffold N50 4
Scaffold L50 (Mbp) 6.40
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.99, 7.29, 6.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55331 53963 97.5%
Ests est.fasta 114032193 113823771 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1636 1370
transcript 1433 1179
exon 509 302
intron 114 76
description:
protein length (aa) 421 333
exons per gene 2.82 2
# of gene models 14970


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.