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Info • Lasiosphaeria ovina CBS 958.72 v1.0

Status

[November 2017] The Lasiosphaeria ovina CBS 958.72 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lasiosphaeria ovina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.77
Sequencing read coverage depth 101.99x
# of contigs 36
# of scaffolds 36
# of scaffolds >= 2Kbp 35
Scaffold N50 4
Scaffold L50 (Mbp) 5.99
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.16, 7.34, 6.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50061 48979 97.8%
Ests est.fasta 117880857 117350796 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1817 1566
transcript 1609 1362
exon 555 339
intron 111 75
description:
protein length (aa) 455 367
exons per gene 2.90 2
# of gene models 14921


Collaborators

Pierre Gladieux, INRA, Montpellier

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.