Info • Lasiosphaeria similisorbina ILLS00125647 v1.0

Status

[April 2023] The Lasiosphaeria similisorbina ILLS00125647 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 43.61
Sequencing read coverage depth 145.23x
# of contigs 553
# of scaffolds 488
# of scaffolds >= 2Kbp 432
Scaffold N50 48
Scaffold L50 (Mbp) 0.31
# of gaps 65
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.85, 0.78, 0.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 81477 78749 96.7%
Ests est.fasta 239216987 236735679 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1852 1587
transcript 1628 1379
exon 572 352
intron 123 76
description:
protein length (aa) 455 363
exons per gene 2.85 2
# of gene models 13222


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.