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Info • Lentinula boryana ET3784 v1.0

Status

[July 2019] The Lentinula boryana ET3784 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula boryana ET3784 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.45
Sequencing read coverage depth 56.92x
# of contigs 202
# of scaffolds 202
# of scaffolds >= 2Kbp 199
Scaffold N50 32
Scaffold L50 (Mbp) 0.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.26, 0.93, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65399 62884 96.2%
Ests est.fasta 193177428 190554236 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1855 1602
transcript 1518 1304
exon 241 146
intron 66 57
description:
protein length (aa) 442 359
exons per gene 6.31 5
# of gene models 12281


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.