Info • Lentinula boryana TFB10292 v1.0

Status

[July 2020] The Lentinula boryana TFB10292 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula boryana TFB10292 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.33
Sequencing read coverage depth 93.9609178512x
# of contigs 2227
# of scaffolds 2152
# of scaffolds >= 2Kbp 1481
Scaffold N50 154
Scaffold L50 (Mbp) 0.06
# of gaps 75
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.34, 0.33, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49130 43928 89.4%
Ests est.fasta 175424868 172009270 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1815 1556
transcript 1486 1268
exon 239 145
intron 65 57
description:
protein length (aa) 439 357
exons per gene 6.22 5
# of gene models 12154


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.