Info • Lentinula afn. boryana TFB7829 v1.0

Status

[August 2019] The Lentinula afn. boryana TFB7829 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula afn. boryana TFB7829 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.64
Sequencing read coverage depth 237.001183021807x
# of contigs 1864
# of scaffolds 1807
# of scaffolds >= 2Kbp 1302
Scaffold N50 120
Scaffold L50 (Mbp) 0.08
# of gaps 57
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.42, 0.38, 0.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 78091 73388 94.0%
Ests est.fasta 407800634 396153972 97.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1821 1560
transcript 1493 1272
exon 241 146
intron 65 57
description:
protein length (aa) 436 355
exons per gene 6.18 5
# of gene models 12379


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.