Info • Lentinula boryana TFB10827 v1.0

Status

[July 2019] The Lentinula boryana TFB10827 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula boryana TFB10827 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.41
Sequencing read coverage depth 175.936868703x
# of contigs 1408
# of scaffolds 1386
# of scaffolds >= 2Kbp 1035
Scaffold N50 125
Scaffold L50 (Mbp) 0.07
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.45, 0.41, 0.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 86939 83736 96.3%
Ests est.fasta 208388026 206715379 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1811 1557
transcript 1482 1272
exon 240 145
intron 65 57
description:
protein length (aa) 437 356
exons per gene 6.19 5
# of gene models 11931


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.