Status
[May 2024] The Lipomyces doorenjongii NRRL Y-27494 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.75 |
| Sequencing read coverage depth | 381.9x |
| # of contigs | 285 |
| # of scaffolds | 280 |
| # of scaffolds >= 2Kbp | 250 |
| Scaffold N50 | 28 |
| Scaffold L50 (Mbp) | 0.21 |
| # of gaps | 5 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.63, 0.52, 0.50 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 33238 | 29570 | 89.0% |
| Ests | est.fasta | 192446085 | 191005061 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1916 | 1708 |
| transcript | 1773 | 1569 |
| exon | 564 | 336 |
| intron | 69 | 57 |
| description: | ||
| protein length (aa) | 450 | 377 |
| exons per gene | 3.15 | 3 |
| # of gene models | 7263 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
