Info • Lipomyces doorenjongii NRRL Y-27495 v1.0

Status

[May 2024] The Lipomyces doorenjongii NRRL Y-27495 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 18.83
Sequencing read coverage depth 372.72x
# of contigs 295
# of scaffolds 288
# of scaffolds >= 2Kbp 254
Scaffold N50 26
Scaffold L50 (Mbp) 0.22
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.63, 0.54, 0.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28383 27187 95.8%
Ests est.fasta 211254869 206618057 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1917 1709
transcript 1774 1572
exon 566 337
intron 69 57
description:
protein length (aa) 448 374
exons per gene 3.14 3
# of gene models 7309


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.