Info • Lipomyces doorenjongii CBS 8726 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.12
Sequencing read coverage depth 331.78x
# of contigs 401
# of scaffolds 386
# of scaffolds >= 2Kbp 323
Scaffold N50 25
Scaffold L50 (Mbp) 0.22
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.99, 0.85, 0.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28748 27413 95.4%
Ests est.fasta 133217338 131527637 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1771 1571
transcript 1635 1440
exon 529 319
intron 67 57
description:
protein length (aa) 445 373
exons per gene 3.09 3
# of gene models 7790


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.