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Info • Lecythophora sp. AK0013 v1.0

Status

[February 2017] The Lecythophora sp. AK0013 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lecythophora sp. AK0013 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.65
Sequencing read coverage depth 100.1x
# of contigs 777
# of scaffolds 171
# of scaffolds >= 2Kbp 109
Scaffold N50 5
Scaffold L50 (Mbp) 3.62
# of gaps 606
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 9.23, 5.23, 4.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27746 26885 96.9%
Ests est.fasta 274337412 149075843 54.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1415
transcript 1521 1280
exon 591 359
intron 93 64
description:
protein length (aa) 445 361
exons per gene 2.57 2
# of gene models 12290


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.