Info • Lentinula edodes VB361 v1.0

Status

[August 2019] The Lentinula edodes VB361 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula edodes VB361 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.71
Sequencing read coverage depth 203.858384902962x
# of contigs 1930
# of scaffolds 1850
# of scaffolds >= 2Kbp 1402
Scaffold N50 164
Scaffold L50 (Mbp) 0.07
# of gaps 80
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.39, 0.30, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 67237 60604 90.1%
Ests est.fasta 259323147 246833169 95.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1804 1548
transcript 1474 1255
exon 240 147
intron 66 57
description:
protein length (aa) 431 349
exons per gene 6.13 5
# of gene models 13818


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.