Info • Lentinula edodes CS-584 v1.0

Status

[July 2019] The Lentinula edodes CS-584 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula edodes CS-584 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.47
Sequencing read coverage depth 109.948090858x
# of contigs 1733
# of scaffolds 1664
# of scaffolds >= 2Kbp 1251
Scaffold N50 123
Scaffold L50 (Mbp) 0.08
# of gaps 69
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.35, 0.34, 0.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39105 37878 96.9%
Ests est.fasta 33380547 32446087 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1809 1543
transcript 1479 1251
exon 241 147
intron 66 58
description:
protein length (aa) 435 351
exons per gene 6.14 5
# of gene models 13619


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.