Info • Lentinula afn. lateritia sp2 HRB7682 ss15 v1.0

Status

[December 2017] The Lentinula lateritia sp2 HRB7682 ss15 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula afn. lateritia sp2 HRB7682 ss15 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.79
Sequencing read coverage depth 96.33x
# of contigs 92
# of scaffolds 92
# of scaffolds >= 2Kbp 91
Scaffold N50 16
Scaffold L50 (Mbp) 0.93
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.20, 2.18, 2.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39144 37964 97.0%
Ests est.fasta 110567665 109912958 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1511
transcript 1439 1217
exon 234 144
intron 67 57
description:
protein length (aa) 429 348
exons per gene 6.14 5
# of gene models 13891


Collaborators

David Hibbett, Clark University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.