We’re soliciting feedback from JGI primary and data users on JGI Data Release and Utilization policies. Fill out our Request for Information by April 21.
Info • Lentinula edodes NBRC 111202


The Lentinula edodes NBRC 111202 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl on Aug 19, 2017. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Lentinula edodes NBRC 111202 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.92
Sequencing read coverage depth 50x
# of contigs 2973
# of scaffolds 1951
# of scaffolds >= 2Kbp 1003
Scaffold N50 109
Scaffold L50 (Mbp) 0.10
# of gaps 1022
% of scaffold length in gaps 2.4%
Three largest Scaffolds (Mbp) 0.59, 0.42, 0.40

Gene Models ExternalModels
length (bp) of: average median
gene 1869 1481
transcript 1322 1044
exon 167 97
intron 81 59
protein length (aa) 441 348
exons per gene 7.94 6
# of gene models 12051

Genome Reference(s)


This project was not sequenced at the JGI.