Info • Lentinula edodes B17 v1.1
Please note that this organism is for archival use only. Please see the current Lentinula edodes B17 v1.3 site for the latest data and information.

Status

[November 2018] The genome sequence and gene prediction of Lentinula edodes B17 were not determined by the JGI, but were downloaded from NCBI and the article, Park et al., 2017 on Aug 28, 2018, respectivley, and have been published (PubMed: 29845094,26924240). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Lentinula edodes B17 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.11
Sequencing read coverage depth 61.0x
# of contigs 123
# of scaffolds 31
# of scaffolds >= 2Kbp 31
Scaffold N50 5
Scaffold L50 (Mbp) 3.66
# of gaps 92
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 5.85, 5.33, 5.31


Gene Models FilteredModels1
length (bp) of: average median
gene 1354 1109
transcript 1019 849
exon 198 123
intron 83 58
description:
protein length (aa) 340 283
exons per gene 5.14 4
# of gene models 14002


Genome Reference(s)

Funding

This project was not sequenced at the JGI.