Info • Lentinula edodes Le(Bin) 0899 ss11 v1.0

Status

[December 2017] The Lentinula edodes Le(Bin) 0899 ss11 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula edodes Le(Bin) 0899 ss11 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.59
Sequencing read coverage depth 99.39x
# of contigs 128
# of scaffolds 128
# of scaffolds >= 2Kbp 128
Scaffold N50 22
Scaffold L50 (Mbp) 0.69
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.35, 1.92, 1.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65378 63420 97.0%
Ests est.fasta 106163725 105783177 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1481
transcript 1429 1191
exon 236 143
intron 67 57
description:
protein length (aa) 427 344
exons per gene 6.06 5
# of gene models 14079


Collaborators

David Hibbett, Clark University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.