Info • Lentinula lateritia RHP3577 ss4 v1.0

Status

[December 2017] The Lentinula lateritia RHP3577 ss4 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula lateritia RHP3577 ss4 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.43
Sequencing read coverage depth 97.64x
# of contigs 214
# of scaffolds 214
# of scaffolds >= 2Kbp 213
Scaffold N50 42
Scaffold L50 (Mbp) 0.37
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.05, 0.94, 0.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 81824 49700 60.7%
Ests est.fasta 131830343 129593797 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1502
transcript 1444 1212
exon 237 145
intron 66 57
description:
protein length (aa) 429 346
exons per gene 6.10 5
# of gene models 13354


Collaborators

David Hibbett, Clark University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.