Info • Lentinula novae-zelandiae TMI-1172 v1.0


[September 2018] The Lentinula novae-zelandiae TMI-1172 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula novae-zelandiae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.62
Sequencing read coverage depth 148.9x
# of contigs 2015
# of scaffolds 1732
# of scaffolds >= 2Kbp 1350
Scaffold N50 183
Scaffold L50 (Mbp) 0.05
# of gaps 283
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 0.38, 0.37, 0.25

Gene Models FilteredModels1
length (bp) of: average median
gene 1660 1389
transcript 1307 1068
exon 213 134
intron 71 58
protein length (aa) 436 356
exons per gene 6.14 5
# of gene models 12286


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.