Info • Lentinula raphanica TFB9929 ss4 v1.0

Status

[September 2018] The Lentinula raphanica TFB9929 ss4 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula raphanica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.09
Sequencing read coverage depth 134x
# of contigs 2383
# of scaffolds 2133
# of scaffolds >= 2Kbp 1687
Scaffold N50 268
Scaffold L50 (Mbp) 0.04
# of gaps 250
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.24, 0.21, 0.21


Gene Models FilteredModels1
length (bp) of: average median
gene 1631 1361
transcript 1283 1059
exon 219 137
intron 74 59
description:
protein length (aa) 428 353
exons per gene 5.85 5
# of gene models 14352


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.