Info • Lentinus tigrinus ALCF2SS1-6 v1.0

Status

Oct 2013. The Lentinus tigrinus genome was sequenced using the Illumina platform, assembled with AllPathsLG version R46652 (Gnerre et al., 2010), and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Lentinus tigrinus ALCF2SS1-6 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.88
Sequencing read coverage depth 97.8
# of contigs 571
# of scaffolds 286
# of scaffolds >= 2Kbp 219
Scaffold N50 20
Scaffold L50 (Mbp) 0.57
# of gaps 285
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 2.30, 2.20, 1.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 30004 29782 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1772 1524
transcript 1427 1216
exon 255 156
intron 77 60
description:
protein length (aa) 411 343
exons per gene 5.59 4
# of gene models 15581


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wu B, Xu Z, Knudson A, Carlson A, Chen N, Kovaka S, LaButti K, Lipzen A, Pennachio C, Riley R, Schakwitz W, Umezawa K, Ohm RA, Grigoriev IV, Nagy LG, Gibbons J, Hibbett D
Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies.
Genome Biol Evol. 2018 Dec 1;10(12):3250-3261. doi: 10.1093/gbe/evy246

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.