Info • Lentinus tigrinus ALCF2SS1-7 v1.0

Status

Oct 2013. The Lentinus tigrinus genome was sequenced using the Illumina platform, assembled with AllPathsLG version R46652 (Gnerre et al., 2010), and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Lentinus tigrinus ALCF2SS1-7 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.53
Sequencing read coverage depth 96.2
# of contigs 466
# of scaffolds 207
# of scaffolds >= 2Kbp 173
Scaffold N50 11
Scaffold L50 (Mbp) 0.85
# of gaps 259
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 3.54, 2.28, 2.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 29976 29467 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1790 1530
transcript 1436 1227
exon 255 156
intron 78 60
description:
protein length (aa) 414 346
exons per gene 5.63 4
# of gene models 15380


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.