Status
(Aug 2015) The Lentinellus vulpinus AHS73672-sp genome was sequenced using Illumina and assembled together with AllPathsLG.
Summary statistics for the Lentinellus vulpinusAHS73672-sp
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.71 |
| Sequencing read coverage depth | 94.9x |
| # of contigs | 1554 |
| # of scaffolds | 578 |
| # of scaffolds >= 2Kbp | 469 |
| Scaffold N50 | 45 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 976 |
| % of scaffold length in gaps | 4.0% |
| Three largest Scaffolds (Mbp) | 1.71, 1.66, 0.59 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 43797 | 42969 | 98.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1715 | 1442 |
| transcript | 1423 | 1190 |
| exon | 254 | 157 |
| intron | 65 | 58 |
| description: | ||
| protein length (aa) | 401 | 321 |
| exons per gene | 5.61 | 4 |
| # of gene models | 13477 |
Collaborators
Joseph Spatafora, Oregon State University
Laszlo Nagy, Clark University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
