Info • Leptoporus mollis OMC1684 v1.0


[November 2018] The Leptoporus mollis OMC1684 genome was sequenced with PacBio, assembled with Falcon (v1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Leptoporus mollis OMC1684 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.01
Sequencing read coverage depth 307.9x
# of contigs 337
# of scaffolds 337
# of scaffolds >= 2Kbp 325
Scaffold N50 14
Scaffold L50 (Mbp) 0.78
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.55, 3.70, 2.82

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 79724 77555 97.3%
Ests est.fasta 246870490 244523352 99.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1925 1660
transcript 1564 1344
exon 239 148
intron 67 58
protein length (aa) 460 377
exons per gene 6.55 5
# of gene models 12118



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.