Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Leptosphaeria maculans


The genome of Leptosphaeria maculans was not sequenced by the JGI, but by Genoscope EVRY. A consortium led by the URGI-INRA annotated the genome. The genome sequence and gene predictions were downloaded from the URGI-INRA website. JGI tools have been used to annotate these gene predictions.

Summary statistics for the Leptosphaeria maculans release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.89
Sequencing read coverage depth 8.31
# of contigs 1578
# of scaffolds 41
# of scaffolds >= 2Kbp 41
Scaffold N50 10
Scaffold L50 (Mbp) 1.77
# of gaps 1537
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 4.26, 3.38, 2.94

Gene Models ExternalModels
length (bp) of: average median
gene 1446 1162
transcript 1258 1002
exon 446 214
intron 105 65
protein length (aa) 419 334
exons per gene 2.82 2
# of gene models 12469

Genome Reference(s)