Info • Lepista nuda CBS 247.69 v1.0

Status

(Dec 2015) The Lepista nuda CBS 247.69 genome was sequenced using Illumina technology and assembled with AllPathsLG.

Summary statistics for the Lepista nuda CBS 247.69 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.49
Sequencing read coverage depth 93.4x
# of contigs 2234
# of scaffolds 822
# of scaffolds >= 2Kbp 603
Scaffold N50 49
Scaffold L50 (Mbp) 0.27
# of gaps 1412
% of scaffold length in gaps 8.0%
Three largest Scaffolds (Mbp) 1.46, 0.85, 0.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63470 60758 95.7%
Ests est.fasta 184018934 179799939 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1700 1463
transcript 1391 1176
exon 227 137
intron 62 56
description:
protein length (aa) 396 324
exons per gene 6.13 5
# of gene models 14880


Collaborators

José María Barrasa, Universidad de Alcalá, Spain

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.