Info • Leptodontidium sp. MPI-SDFR-AT-0119 v2.0


[January 2018] The Leptodontidium orchidicola MPI-SDFR-AT-0119 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Leptodontidium orchidicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 77.02
Sequencing read coverage depth 85.01x
# of contigs 70
# of scaffolds 70
# of scaffolds >= 2Kbp 70
Scaffold N50 10
Scaffold L50 (Mbp) 2.68
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.86, 5.64, 4.43

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48536 46681 96.2%
Ests est.fasta 232130935 97696884 42.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1720 1508
transcript 1534 1331
exon 477 303
intron 86 59
protein length (aa) 442 366
exons per gene 3.21 3
# of gene models 21254


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.