Info • Lepidopterella palustris v1.0


[March 2013] The Lepidopterella palustris genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Lepidopterella palustris CBS 459.81 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.67
Sequencing read coverage depth 133.8x
# of contigs 3529
# of scaffolds 3371
# of scaffolds >= 2Kbp 2027
Scaffold N50 242
Scaffold L50 (Mbp) 0.05
# of gaps 158
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.32, 0.25, 0.24

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 27515 26506 96.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1644 1399
transcript 1465 1221
exon 486 295
intron 91 61
protein length (aa) 423 337
exons per gene 3.02 2
# of gene models 13870


Joseph Spatafora, Oregon State University, USA

Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.