Info • Leptodontium sp. PMI_412 v1.0

Status

[Dec 2015] The Leptodontidium sp. PMI 412 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R46652, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Leptodontidium v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 73.78
Sequencing read coverage depth 140.9x
# of contigs 966
# of scaffolds 815
# of scaffolds >= 2Kbp 728
Scaffold N50 67
Scaffold L50 (Mbp) 0.31
# of gaps 151
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.06, 1.58, 1.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30358 29257 96.4%
Ests est.fasta 145540822 75946363 52.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1550 1331
transcript 1373 1162
exon 453 288
intron 89 59
description:
protein length (aa) 404 332
exons per gene 3.03 3
# of gene models 22064


Collaborators

Gregory Bonito, Michigan State University

Joseph Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.