[December 2022] The Leratiomyces ceres mycota028 v2.0 genome was sequenced with Oxford Nanopore at University of Otago (UO) as well as with PacBio and Illumina at JGI, then together assembled with canu at UO, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity at JGI, and also sequenced with PacBio and clustered with IsoSeq at JGI. The mitochondrial genome was assembled separately at JGI and is available under the Download tab.

This genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Some of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.