Info • Leratiomyces erythrocephalus mycota031 v1.0

Status

[June 2020] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Leratiomyces erythrocephalus mycota031 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 81.04
Sequencing read coverage depth 18.97x
# of contigs 1122
# of scaffolds 1122
# of scaffolds >= 2Kbp 1096
Scaffold N50 169
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.15, 1.05, 0.97


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 94015 75346 80.1%
Ests est.fasta 193110580 177939375 92.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1726 1487
transcript 1366 1152
exon 233 141
intron 76 60
description:
protein length (aa) 395 318
exons per gene 5.86 5
# of gene models 18110


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.