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Info • Leucangium carthusianum GMNB180 v1.0

Status

[October 2019] The nuclear genome was extracted from a metagenome sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Leucangium carthusianum GMNB180 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 114.19
Sequencing read coverage depth 60.04x
# of contigs 1233
# of scaffolds 1233
# of scaffolds >= 2Kbp 1196
Scaffold N50 89
Scaffold L50 (Mbp) 0.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.65, 1.62, 1.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 172103003 169284972 98.4%
Other Trinity_assembled_Illumina_transcriptome 91418 82561 90.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1398
transcript 1434 1185
exon 399 250
intron 90 65
description:
protein length (aa) 410 317
exons per gene 3.60 3
# of gene models 12369


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.