Info • Lichtheimia hyalospora v1.0

Status

Minimal Draft

[May 2013] The Lichtheimia hyalospora genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).


Summary statistics for the Lichtheimia hyalospora v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.28
Sequencing read coverage depth 140.1x
# of contigs 2294
# of scaffolds 2222
# of scaffolds >= 2Kbp 494
Scaffold N50 79
Scaffold L50 (Mbp) 0.13
# of gaps 72
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.62, 0.48, 0.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 16097 15500 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1640 1382
transcript 1363 1134
exon 273 164
intron 71 62
description:
protein length (aa) 417 342
exons per gene 4.99 4
# of gene models 12062


Collaborators

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.