Status
The genome sequence and gene models of Lichtheimia ramosa JMRC FSU 6197 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Lichtheimia ramosa JMRC FSU
6197 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.71 |
| Sequencing read coverage depth | |
| # of contigs | 85 |
| # of scaffolds | 74 |
| # of scaffolds >= 2Kbp | 74 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.22 |
| # of gaps | 11 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.09, 2.89, 2.26 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1763 | 1527 |
| transcript | 1504 | 1297 |
| exon | 289 | 169 |
| intron | 64 | 60 |
| description: | ||
| protein length (aa) | 464 | 385 |
| exons per gene | 5.20 | 4 |
| # of gene models | 11542 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Linde J, Schwartze V, Binder U, Lass-Flörl C, Voigt K, Horn F
De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa.
Genome Announc. 2014 Sep 11;2(5):. doi: 10.1128/genomeA.00888-14
Linde J, Schwartze V, Binder U, Lass-Flörl C, Voigt K, Horn F
De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa.
Genome Announc. 2014 Sep 11;2(5):. doi: 10.1128/genomeA.00888-14
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mucoromycotina Mucorales
Funding
This project was not sequenced at the JGI.
