Status
[April 2025] The Linnemannia elongata OR4_A40 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.14 |
| Sequencing read coverage depth | 53.39x |
| # of contigs | 31 |
| # of scaffolds | 31 |
| # of scaffolds >= 2Kbp | 31 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 2.87 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.82, 4.21, 4.16 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2003 | 1729 |
| transcript | 1528 | 1266 |
| exon | 412 | 212 |
| intron | 177 | 119 |
| description: | ||
| protein length (aa) | 509 | 422 |
| exons per gene | 3.71 | 3 |
| # of gene models | 13778 |
Collaborators
- Jessie Uehling, Oregon State University, Oregon, USA
- Teresa Pawlowska, Cornell University, New York, USA
- Greg Bonito, Michigan State University, Michigan, USA
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mortierellomycotina
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
