Info • Lindgomyces ingoldianus ATCC 200398 v1.0

Status

[Dec 2014] The Lindgomyces ingoldianus genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lindgomyces ingoldianus ATCC 200398 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 69.03
Sequencing read coverage depth 55.8x
# of contigs 1204
# of scaffolds 200
# of scaffolds >= 2Kbp 161
Scaffold N50 19
Scaffold L50 (Mbp) 1.22
# of gaps 1004
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 3.53, 2.76, 2.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 21630 20722 95.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1719 1445
transcript 1497 1241
exon 368 168
intron 74 55
description:
protein length (aa) 444 357
exons per gene 4.07 3
# of gene models 15956


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.