Status
[May 2015] The Lindra thalassiae JK4322 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).
Summary statistics for the Lindra thallasiae JK4322 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.92 |
| Sequencing read coverage depth | 145 |
| # of contigs | 173 |
| # of scaffolds | 149 |
| # of scaffolds >= 2Kbp | 135 |
| Scaffold N50 | 19 |
| Scaffold L50 (Mbp) | 0.48 |
| # of gaps | 24 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.22, 1.45, 1.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 28555 | 27848 | 97.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1815 | 1584 |
| transcript | 1622 | 1390 |
| exon | 622 | 366 |
| intron | 122 | 83 |
| description: | ||
| protein length (aa) | 470 | 385 |
| exons per gene | 2.61 | 2 |
| # of gene models | 8029 |
Collaborators
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
