Info • Lipomyces arxii Phaff 12-163 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 11.92
Sequencing read coverage depth 533.48x
# of contigs 98
# of scaffolds 85
# of scaffolds >= 2Kbp 66
Scaffold N50 6
Scaffold L50 (Mbp) 0.55
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.57, 1.17, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16827 16368 97.3%
Ests est.fasta 93985200 93017333 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1753 1518
transcript 1638 1419
exon 531 286
intron 57 50
description:
protein length (aa) 468 392
exons per gene 3.09 3
# of gene models 5729


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.