Info • Lipomyces chichibuensis CBS 12929 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 16.37
Sequencing read coverage depth 380.22x
# of contigs 183
# of scaffolds 169
# of scaffolds >= 2Kbp 154
Scaffold N50 17
Scaffold L50 (Mbp) 0.29
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.99, 0.78, 0.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26908 25428 94.5%
Ests est.fasta 244299776 242647514 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1839 1604
transcript 1698 1481
exon 534 314
intron 67 57
description:
protein length (aa) 463 385
exons per gene 3.18 3
# of gene models 6545


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.