Info • Lipomyces doorenjongii Phaff 78-26 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.40
Sequencing read coverage depth 359.97x
# of contigs 478
# of scaffolds 473
# of scaffolds >= 2Kbp 412
Scaffold N50 48
Scaffold L50 (Mbp) 0.12
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.39, 0.37, 0.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28101 26829 95.5%
Ests est.fasta 143329707 141542320 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1791 1584
transcript 1652 1452
exon 535 327
intron 68 57
description:
protein length (aa) 448 373
exons per gene 3.09 3
# of gene models 7558


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.