Info • Lipomyces mesembrius CBS 7600 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 16.87
Sequencing read coverage depth 381.9x
# of contigs 142
# of scaffolds 126
# of scaffolds >= 2Kbp 104
Scaffold N50 11
Scaffold L50 (Mbp) 0.43
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.69, 0.98, 0.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28569 27630 96.7%
Ests est.fasta 210932115 208478655 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1781 1556
transcript 1638 1413
exon 517 304
intron 68 57
description:
protein length (aa) 448 372
exons per gene 3.17 3
# of gene models 6759


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.