Info • Lipomyces doorenjongii NRRL Y-27504 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 18.88
Sequencing read coverage depth 349.12x
# of contigs 290
# of scaffolds 276
# of scaffolds >= 2Kbp 255
Scaffold N50 28
Scaffold L50 (Mbp) 0.22
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.62, 0.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27134 25982 95.8%
Ests est.fasta 136301610 135203544 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1794 1593
transcript 1654 1464
exon 527 313
intron 67 57
description:
protein length (aa) 451 379
exons per gene 3.14 3
# of gene models 7320


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.