Info • Lipomyces kononenkoae CBS 7786 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.38
Sequencing read coverage depth 358.23x
# of contigs 413
# of scaffolds 401
# of scaffolds >= 2Kbp 338
Scaffold N50 34
Scaffold L50 (Mbp) 0.17
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.79, 0.47, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28137 26620 94.6%
Ests est.fasta 161791121 160495331 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1763 1564
transcript 1627 1422
exon 528 317
intron 68 58
description:
protein length (aa) 443 368
exons per gene 3.08 3
# of gene models 7799


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.