Info • Lipomyces oligophaga CBS 7107 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 13.58
Sequencing read coverage depth 447.57x
# of contigs 30
# of scaffolds 28
# of scaffolds >= 2Kbp 20
Scaffold N50 4
Scaffold L50 (Mbp) 1.56
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.49, 2.00, 1.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30281 19857 65.6%
Ests est.fasta 368193928 364858144 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1830 1590
transcript 1717 1488
exon 655 348
intron 72 56
description:
protein length (aa) 488 409
exons per gene 2.62 2
# of gene models 5781


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.