Info • Lipomyces orientalis CBS 10300 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.86
Sequencing read coverage depth 330.46x
# of contigs 378
# of scaffolds 372
# of scaffolds >= 2Kbp 337
Scaffold N50 43
Scaffold L50 (Mbp) 0.15
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.44, 0.43, 0.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30351 27267 89.8%
Ests est.fasta 130573103 129206925 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1795 1593
transcript 1659 1463
exon 537 326
intron 67 58
description:
protein length (aa) 449 375
exons per gene 3.09 3
# of gene models 7764


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.