Info • Lipomyces tetrasporus Phaff 51-55 v1.0

Status

[September 2023] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.92
Sequencing read coverage depth 349.7x
# of contigs 302
# of scaffolds 294
# of scaffolds >= 2Kbp 249
Scaffold N50 26
Scaffold L50 (Mbp) 0.22
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.14, 0.58, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28865 27193 94.2%
Ests est.fasta 154187656 153123026 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1761 1542
transcript 1624 1413
exon 527 317
intron 68 57
description:
protein length (aa) 442 367
exons per gene 3.08 3
# of gene models 7831


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.