Info • Lipomyces starkeyi Phaff 78-25 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.97
Sequencing read coverage depth 339.46x
# of contigs 305
# of scaffolds 295
# of scaffolds >= 2Kbp 265
Scaffold N50 22
Scaffold L50 (Mbp) 0.29
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.67, 0.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27773 26385 95.0%
Ests est.fasta 112822758 111696534 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1762 1564
transcript 1627 1427
exon 531 322
intron 67 57
description:
protein length (aa) 440 365
exons per gene 3.07 3
# of gene models 7746


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.