Info • Lipomyces starkeyi Phaff 78-24 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 19.59
Sequencing read coverage depth 355.44x
# of contigs 570
# of scaffolds 566
# of scaffolds >= 2Kbp 505
Scaffold N50 55
Scaffold L50 (Mbp) 0.09
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.48, 0.44, 0.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29450 27813 94.4%
Ests est.fasta 137906790 136670539 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1771 1570
transcript 1635 1432
exon 537 325
intron 69 57
description:
protein length (aa) 443 367
exons per gene 3.04 3
# of gene models 7603


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.