Info • Lipomyces starkeyi Phaff 55-103 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.06
Sequencing read coverage depth 341.48x
# of contigs 506
# of scaffolds 500
# of scaffolds >= 2Kbp 446
Scaffold N50 38
Scaffold L50 (Mbp) 0.14
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.52, 0.50, 0.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28854 25336 87.8%
Ests est.fasta 101213608 100114849 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1767 1555
transcript 1632 1428
exon 537 326
intron 68 57
description:
protein length (aa) 442 365
exons per gene 3.04 3
# of gene models 7747


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.